from ase import units from ase.md.langevin import Langevin from ase.io import read, write import numpy as np import time from macetools.calculators.polarizable import MACEPolarizable calculator = MACEPolarizable( model_path="./mace_pol_spice_v1_swa.model", device="cuda", num_scf_steps=25, total_charge_key="total_charge", constant_charge=True, ) init_conf = read("./chignolin_formatted.xyz", "0") init_conf.set_calculator(calculator) dyn = Langevin(init_conf, 1.0 * units.fs, temperature_K=300, friction=5e-3) def write_frame(): dyn.atoms.write("chignolin_md_scf_25_steps_test.xyz", append=True) dyn.attach(write_frame, interval=100) dyn.run(100000) print("MD finished!")