Update README.md

README.md

@@ -1,3 +1,16 @@
+---
+license: apache-2.0
+tags:
+- bacteria
+- genomics
+- prokaryotes
+- gene_essentiality
+- genes
+- DNA
+pretty_name: Dataset for predicting essential genes in bacterial genomes (DNA)
+size_categories:
+- n<1K
+---
 # Dataset for essential genes prediction in bacterial genomes (DNA)
 
 A dataset of 169,408 genes with gene essentiality labels (binary) from 51 bacterial genomes across 37 species.
@@ -17,10 +30,11 @@ from datasets import load_dataset
 ds = load_dataset("macwiatrak/bacbench-essential-genes-dna", split="validation")
 
 # fetch an example
-item = next(iter(ds))
+item = ds[0]
 # get gene sequences
+dna_seq = item['dna_seq']
 gene_dna_seqs = [
-  i["sequence"][int(start - 1):int(end)] for start, end in zip(item["start"], item["end"])
+  item['dna_seq'][int(start - 1):int(end)] for start, end in zip(item["start"], item["end"])
 ]
 # get labels
 labels = item["essential"]
@@ -76,4 +90,4 @@ configs:
     path: data/validation-*
   - split: test
     path: data/test-*
----
+---