Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
|
@@ -1,29 +1,50 @@
|
|
| 1 |
---
|
| 2 |
-
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
- name: train
|
| 10 |
-
num_bytes: 12641
|
| 11 |
-
num_examples: 272
|
| 12 |
-
- name: validation
|
| 13 |
-
num_bytes: 1562
|
| 14 |
-
num_examples: 34
|
| 15 |
-
- name: test
|
| 16 |
-
num_bytes: 1579
|
| 17 |
-
num_examples: 34
|
| 18 |
-
download_size: 14218
|
| 19 |
-
dataset_size: 15782
|
| 20 |
-
configs:
|
| 21 |
-
- config_name: default
|
| 22 |
-
data_files:
|
| 23 |
-
- split: train
|
| 24 |
-
path: data/train-*
|
| 25 |
-
- split: validation
|
| 26 |
-
path: data/validation-*
|
| 27 |
-
- split: test
|
| 28 |
-
path: data/test-*
|
| 29 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
+
license: mit
|
| 3 |
+
language: [en]
|
| 4 |
+
tags:
|
| 5 |
+
- seq2seq
|
| 6 |
+
- dna
|
| 7 |
+
- protein
|
| 8 |
+
- eb502
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 9 |
---
|
| 10 |
+
|
| 11 |
+
# DNA → Amino Acid Translation Dataset (EB502 HW1)
|
| 12 |
+
|
| 13 |
+
## Description
|
| 14 |
+
|
| 15 |
+
This dataset contains randomly generated DNA sequences (A, C, G, T)
|
| 16 |
+
of fixed length (e.g., 30 nucleotides), and their corresponding
|
| 17 |
+
amino acid sequences translated using the standard genetic code.
|
| 18 |
+
|
| 19 |
+
Each example is a simple **sequence-to-sequence** pair:
|
| 20 |
+
|
| 21 |
+
- `src`: input DNA sequence (string)
|
| 22 |
+
- `tgt`: output amino acid sequence (string)
|
| 23 |
+
|
| 24 |
+
Stop codons (*TAA, TAG, TGA*) terminate translation,
|
| 25 |
+
and empty translations are filtered out.
|
| 26 |
+
|
| 27 |
+
This dataset is created as part of **KAIST EB502 (Seq2Seq Data HW1)**.
|
| 28 |
+
|
| 29 |
+
## Dataset Structure
|
| 30 |
+
|
| 31 |
+
- **Fields**
|
| 32 |
+
- `src`: DNA sequence, composed of 'A', 'C', 'G', 'T'
|
| 33 |
+
- `tgt`: translated amino acid sequence, using standard codon table
|
| 34 |
+
|
| 35 |
+
- **Splits**
|
| 36 |
+
- `train` (~80% of samples)
|
| 37 |
+
- `validation` (~10% of samples)
|
| 38 |
+
- `test` (~10% of samples)
|
| 39 |
+
|
| 40 |
+
## Intended Use
|
| 41 |
+
|
| 42 |
+
This dataset is intended for educational purposes, to practice:
|
| 43 |
+
|
| 44 |
+
- Sequence-to-sequence data preparation
|
| 45 |
+
- Training simple translation models
|
| 46 |
+
- Using Hugging Face Datasets and Hub
|
| 47 |
+
|
| 48 |
+
## License
|
| 49 |
+
|
| 50 |
+
MIT License.
|