study_ID stringlengths 6 18 | platform stringclasses 3 values | platform_detail stringlengths 36 108 | study_type stringclasses 3 values | pathogen stringclasses 8 values | vaccine stringlengths 4 31 ⌀ | tissue stringclasses 5 values | raw_data stringclasses 2 values | antibody stringclasses 2 values | num_subjects int64 5 271 | num_observations int64 12 880 | num_cells float64 49.8k 647k ⌀ | num_observed_genes float64 12.3k 41k ⌀ | number_of_timepoints median(min, max) stringlengths 8 11 ⌀ | observed_timepoints stringlengths 1 242 ⌀ | meta_variable_list stringlengths 20 254 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GSE68310 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | mixed exposure | influenza_A_virus; influenza_B_virus; enterovirus; human_coronavirus; human_rhinovirus; respiratory_syncytial_virus | null | whole blood | yes | yes | 133 | 880 | null | 18,755 | 7 (4, 7) | Baseline, 0.0, 2.0, 4.0, 6.0, 21.0 | geo_accession;ID;study_ID;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;sex;age;Medications;Duration_of_symptoms |
GSE194378 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | mixed exposure | influenza | Influenza QIV | whole blood | yes | yes | 75 | 412 | null | 21,690 | 5 (0, 9) | -7.0, 0.0, 1.0, 7.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;study_group;vaccine;sex;age;ethnicity;race;symptom_group_previous_covid;side_effect;Duration_of_symptoms;days.since.covid.19.diagnosis;influenza.vaccination.count..previous.10.years. |
GSE74811 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 28 | 83 | null | 18,319 | 3 (2, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine |
GSE74813 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 63 | 286 | null | 18,319 | 5 (1, 5) | 0.0, 1.0, 3.0, 7.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine;sex;age;race |
GSE74815 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 26 | 75 | null | 18,319 | 3 (2, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;Enrollment_year;vaccine |
GSE74816 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 72 | 177 | null | 18,319 | 2 (2, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;tissue;pathogen;title;timepoint;MFC;responder;study_group;Enrollment_year;sex;age |
GSE48023 | microarray | GPL10558; Illumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 110 | 417 | null | 20,514 | 4 (3, 4) | 0.0, 1.0, 3.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age |
GSE48018 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 116 | 431 | null | 18,736 | 4 (1, 4) | 0.0, 1.0, 3.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age |
GSE41080 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 91 | 91 | null | 18,761 | 1 (1, 1) | 0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI |
GSE59743 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 30 | 120 | null | 20,402 | 4 (4, 4) | 0.0, 2.0, 3.0, 4.0, 7.0, 8.0, 9.0, 28.0, 36.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE59654 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 39 | 156 | null | 19,056 | 4 (4, 4) | 0.0, 2.0, 4.0, 7.0, 24.0, 28.0, 32.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE101709 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 26 | 98 | null | 20,420 | 4 (1, 4) | 0.0, 2.0, 7.0, 28.0, 43.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc |
GSE59635 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 19 | 72 | null | 20,525 | 4 (3, 4) | 0.0, 4.0, 7.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;responder_original;vaccine;age_group;immport_expsamp_acc |
GSE101710 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 20 | 79 | null | 20,420 | 4 (3, 4) | 0.0, 2.0, 7.0, 25.0, 28.0, 37.0, 41.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;age_group;immport_expsamp_acc |
GSE47353 | microarray | GPL6244; [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 63 | 292 | null | 22,698 | 5 (1, 5) | -7.0, 0.0, 1.0, 7.0, 70.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity |
GSE190001_PRIME | RNA-seq | GPL30296; Illumina Hiseq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | Pfizer BioNTech/ Moderna | whole blood | yes | yes | 23 | 213 | null | 40,867 | 10 (2, 11) | 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect |
GSE190001_BOOST | RNA-seq | GPL30296; Illumina Hiseq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | Pfizer BioNTech/ Moderna | whole blood | yes | yes | 23 | 226 | null | 40,867 | 10 (7, 11) | 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose;sex;age;ethnicity;PreviousCOVID19;UnderlyingDisease;turbo_reatment;Medications;side_effect |
SDY311 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 63 | 73 | null | 20,538 | 1 (1, 2) | 0.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;Expsample.Accession;ethnicity;race |
SDY112 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 89 | 89 | null | 18,549 | 1 (1, 1) | 0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
SDY315 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza | Influenza TIV | whole blood | yes | yes | 71 | 71 | null | 18,549 | 1 (1, 1) | 0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
GSE207750 | RNA-seq | GPL24676; llumina NovaSeq 6000 (Homo sapiens) | vaccine | influenza | Influenza TIV | whole blood | no | yes | 271 | 271 | null | 24,655 | 1 (1, 1) | 0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;MFC;responder;study_group;vaccine;sex;age;race_ethnicity;BMI;Vaccinated.in.prior.3.seasons;Height_cm;Weight_kg;Current.smoker;Prior.smoker;Sleep.apnea |
GSE246525 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 10 | 38 | null | 29,426 | 4 (3, 4) | 0.0, 1.0, 2.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex |
GSE201533 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | yes | yes | 43 | 161 | null | 24,580 | 3 (2, 6) | 0.0, 1.0, 2.0, 3.0, 4.0, 7.0, 8.0, 9.0, 10.0 | geo_accession;ID;study_ID;tissue;platform;title;timepoint;vaccine_dose;sex;age;BMI |
GSE190747 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | yes | 30 | 115 | null | 24,580 | 3 (2, 5) | 0.0, 1.0, 7.0, 10.0, 11.0, 34.0, 35.0, 40.0, 41.0, 48.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;BMI;UnderlyingDisease;side_effect |
GSE199750 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | whole blood | yes | yes | 86 | 260 | null | 40,952 | 3 (1, 4) | V0, V1, V2A, V3A | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint_group;MFC;responder;vaccine;sex;age |
GSE169159 | RNA-seq | GPL15520; Illumina MiSeq (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 32 | 185 | null | 23,625 | 6 (4, 7) | 0.0, 1.0, 2.0, 7.0, 21.0, 22.0, 23.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;title;timepoint;MFC;responder;vaccine;vaccine_dose;sex;age |
GSE29614 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 9 | 27 | null | 19,498 | 3 (3, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE29615 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza LAIV | PBMC | yes | yes | 28 | 83 | null | 18,319 | 3 (2, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE29617 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 28 | 80 | null | 18,319 | 3 (2, 3) | 0.0, 3.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine |
GSE48762 | microarray | GPL6947; Illumina HumanHT-12 V3.0 expression beadchip | vaccine | influenza/pneumococcal | Influenza TIV/Saline/Pneumovax | whole blood | yes | yes | 34 | 621 | null | 18,771 | 12 (3, 22) | -168.0, -7.0, 0.0, 0.5, 1.0, 1.5, 3.0, 6.0, 7.0, 9.0, 10.0, 12.0, 14.0, 15.0, 21.0, 24.0, 28.0, 36.0, 48.0 | geo_accession;ID;study_ID;tissue;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;immport_expsamp_acc;ethnicity;race |
GSE45735 | RNA-seq | GPL10999; Illumina Genome Analyzer IIx (Homo sapiens) | vaccine | influenza | Influenza TIV | PBMC | yes | yes | 5 | 54 | null | 24,655 | 11 (10, 11) | 0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 10.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;MFC;responder;vaccine;sex;age;ethnicity;race |
GSE201642 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | yes | yes | 15 | 48 | null | 24,580 | 3 (2, 4) | 0.0, 1.0, 2.0, 7.0, 8.0, 26.0, 28.0, 30.0, 31.0, 33.0, 34.0, 35.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;study_group;vaccine;sex;age;UnderlyingDisease |
GSE250023 | RNA-seq | GPL28038; DNBSEQ-G400 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | yes | 18 | 75 | null | 37,624 | 4 (3, 5) | 0.0, 1.5, 7.0, 23.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;responder_original;vaccine;sex;UnderlyingDisease |
challenge_covid19 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | PBMC | no | yes | 16 | 144 | 606,074 | null | null | null | List in the h5ad obs |
GSE246937 | scRNA-seq | GPL21697; NextSeq 550 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b | whole blood | no | yes | 10 | 25 | 49,829 | null | null | null | List in the h5ad obs |
E_MTAB_12993_nose | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | nasal swab | no | no | 19 | 96 | null | 28,848 | 5 (1, 7) | -1.0, 1.0, 3.0, 5.0, 7.0, 10.0, 14.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age |
E_MTAB_12993_blood | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | whole blood | no | no | 35 | 374 | null | 28,848 | 11 (7, 11) | 0.0, 0.25, 1.0, 2.0, 3.0, 4.0, 5.0, 7.0, 10.0, 13.0, 14.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age |
GSE11348 | microarray | GPL570; [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array | inoculation | HRV | null | nasal swab | yes | no | 31 | 93 | null | 18,751 | 3 (3, 3) | 0.0, 0.333333333, 2.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;study_group;sex;age;sham |
GSE61754 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | inoculation | H3N2 | null | whole blood | yes | no | 22 | 88 | null | 20,120 | 4 (4, 4) | 0.0, 0.5, 1.0, 2.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;symptom_group_original;study_group;seroconversion;viral_shedding |
GSE90732 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | inoculation | H1N1 | null | whole blood | yes | no | 21 | 108 | null | 20,523 | 5 (5, 6) | 0.0, 1.0, 2.0, 3.0, 4.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;Total_DSS;study_group;sex;age |
GSE155237 | RNA-seq | GPL16791; Illumina HiSeq 2500 (Homo sapiens) | inoculation | RSV | null | nasal swab | yes | no | 40 | 78 | null | 40,128 | 2 (1, 2) | 0.0, 3.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;infection_group;symptom_group |
GSE73072_H1N1_DEE4 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H1N1 | null | whole blood | yes | no | 19 | 386 | null | 12,313 | 21 (15, 21) | -0.875, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H1N1_DEE3 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H1N1 | null | whole blood | yes | no | 24 | 477 | null | 12,313 | 20 (19, 20) | -0.875, 0.0, 0.208333333, 0.5, 0.875, 1.208333333, 1.5, 1.875, 2.208333333, 2.5, 2.875, 3.208333333, 3.5, 3.875, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.916666667, 6.916666667 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H3N2_DEE2 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H3N2 | null | whole blood | yes | no | 17 | 355 | null | 12,313 | 21 (20, 21) | -0.958333333, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_H3N2_DEE5 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | H3N2 | null | whole blood | yes | no | 21 | 482 | null | 12,313 | 23 (22, 23) | -1.25, 0.083333333, 0.416666667, 0.75, 1.083333333, 1.416666667, 1.75, 2.083333333, 2.416666667, 2.75, 3.083333333, 3.416666667, 3.75, 4.083333333, 4.416666667, 4.75, 5.083333333, 5.416666667, 5.75, 6.083333333, 6.75, 7.083333333, 28.33333333 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_HRV_DUKE | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | HRV | null | whole blood | yes | no | 27 | 471 | null | 12,313 | 19 (12, 19) | -0.458333333, 0.0, 0.166666667, 0.333333333, 0.5, 0.666666667, 0.833333333, 1.0, 1.25, 1.5, 1.75, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.666666667 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group;sham |
GSE73072_HRV_UVA | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | HRV | null | whole blood | yes | no | 20 | 295 | null | 12,313 | 15 (13, 15) | -0.458333333, 0.0, 0.166666667, 0.333333333, 0.5, 0.666666667, 0.833333333, 1.0, 1.25, 1.5, 1.75, 2.0, 3.0, 4.0, 5.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE73072_RSV_DEE1 | microarray | GPL14604; Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG] | inoculation | RSV | null | whole blood | yes | no | 20 | 420 | null | 12,313 | 21 (21, 21) | -1.583333333, 0.0, 0.208333333, 0.5, 0.916666667, 1.208333333, 1.5, 1.916666667, 2.208333333, 2.5, 2.916666667, 3.208333333, 3.5, 3.916666667, 4.208333333, 4.5, 4.916666667, 5.208333333, 5.5, 5.916666667, 6.916666667 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;infection_group;symptom_group |
GSE117580 | RNA-seq | GPL20301; Illumina HiSeq 4000 (Homo sapiens) | mixed exposure | influenza | Influenza LAIV/TIV | nasal swab | yes | no | 35 | 96 | null | 24,655 | 3 (2, 3) | -4.0, 2.0, 9.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE220682 | RNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 203 | 705 | null | 21,701 | 4 (1, 4) | 0.0, 22.0, 180.0, 360.0 | geo_accession;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine |
GSE228839 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/MenACWY | whole blood | no | no | 100 | 170 | null | 24,655 | 2 (1, 3) | CT, CT+7, CT7, D0 | geo_accession;ID;study_ID;tissue;platform;title;timepoint_group;study_group;vaccine;sex;age |
GSE276544 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2/MVA/mRNA-1273 | whole blood | yes | no | 43 | 305 | null | 30,984 | 7 (5, 8) | V1D0, V1D1, V1D3, V1D7, V2D0, V2D1, V2D3, V2D7 | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint_group;vaccine |
GSE209985 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 32 | 188 | null | 40,696 | 6 (5, 6) | 0.0, 1.0, 2.0, 7.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;study_group;vaccine;vaccine_dose;sex;age;PreviousCOVID19;diabetes |
GSE247401 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2/mRNA-1273 | whole blood | yes | no | 17 | 50 | null | 29,506 | 2 (2, 4) | 0.0, 1.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;batch;title;timepoint;vaccine;sex |
GSE265975 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | yes | no | 29 | 100 | null | 39,368 | 4 (1, 4) | 0.0, 7.0, 21.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;timepoint_group;study_group;vaccine |
GSE102012 | microarray | GPL13158; [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate | vaccine | influenza | H5N1 | whole blood | yes | no | 50 | 384 | null | 18,319 | 8 (4, 8) | 0.0, 1.0, 3.0, 7.0, 21.0, 22.0, 24.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE217770 | RNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | influenza | Influenza LAIV | whole blood | yes | no | 53 | 371 | null | 40,129 | 7 (7, 7) | 0.0, 3.0, 7.0, 29.0, 85.0, 92.0, 113.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex |
GSE230494 | RNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens) | vaccine | influenza | Influenza LAIV | nasal swab | yes | yes | 39 | 60 | null | 40,223 | 2 (1, 2) | 0.0, 3.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine |
GSE52005 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza LAIV/TIV | whole blood | yes | no | 38 | 140 | null | 20,525 | 4 (1, 4) | 0.0, 1.0, 7.0, 30.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;race |
GSE107990 | microarray | GPL10558; llumina HumanHT-12 V4.0 expression beadchip | vaccine | influenza | Influenza TIV | PBMC | yes | no | 172 | 671 | null | 20,518 | 4 (2, 4) | 0.0, 2.0, 7.0, 28.0 | geo_accession;ID;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;sex;age;ethnicity |
GSE281864 | RNA-seq | GPL20301; Illumina HiSeq 4000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | whole blood | yes | no | 17 | 193 | null | 37,507 | null | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,14 | geo_accession;study_ID;tissue;platform;pathogen;title;timepoint;vaccine;vaccine_dose |
EMTAB10026 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | inoculation | SARS-CoV-2 | null | PBMC | no | no | 130 | 143 | 647,366 | null | null | null | List in the h5ad obs |
eskd_covid19 | scRNA-seq | Illumina NovaSeq 6000 (Homo sapiens) | mixed exposure | SARS-CoV-2 | null | nasal swab/PBMC | no | no | 61 | 187 | 588,389 | null | null | null | List in the h5ad obs |
GSE201534 | scRNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | ChAdOx1/BNT162b2 | PBMC | no | no | 6 | 12 | 87,160 | null | null | null | List in the h5ad obs |
GSE247917 | scRNA-seq | GPL18573; Illumina NextSeq 500 (Homo sapiens)/GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC | no | no | 14 | 54 | 195,489 | null | null | null | List in the h5ad obs |
GSE195673 | scRNA-seq | GPL24676; Illumina NovaSeq 6000 (Homo sapiens) | vaccine | SARS-CoV-2 | BNT162b2 | PBMC/Lymph Node | no | no | 8 | 56 | 383,635 | null | null | null | List in the h5ad obs |
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