---
library_name: transformers
license: mit
base_model: microsoft/biogpt
tags:
- generated_from_trainer
datasets:
- ncbi_disease
metrics:
- precision
- recall
- f1
- accuracy
model-index:
- name: biogpt-finetuned-ner
  results:
  - task:
      name: Token Classification
      type: token-classification
    dataset:
      name: ncbi_disease
      type: ncbi_disease
      config: ncbi_disease
      split: validation
      args: ncbi_disease
    metrics:
    - name: Precision
      type: precision
      value: 0.3284671532846715
    - name: Recall
      type: recall
      value: 0.40025412960609913
    - name: F1
      type: f1
      value: 0.36082474226804123
    - name: Accuracy
      type: accuracy
      value: 0.9565910770547279
---

<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->

# biogpt-finetuned-ner

This model is a fine-tuned version of [microsoft/biogpt](https://huggingface.co/microsoft/biogpt) on the ncbi_disease dataset.
It achieves the following results on the evaluation set:
- Loss: 0.1555
- Precision: 0.3285
- Recall: 0.4003
- F1: 0.3608
- Accuracy: 0.9566

## Model description

More information needed

## Intended uses & limitations

More information needed

## Training and evaluation data

More information needed

## Training procedure

### Training hyperparameters

The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 8
- eval_batch_size: 8
- seed: 42
- optimizer: Use adamw_torch with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
- lr_scheduler_type: linear
- num_epochs: 3

### Training results

| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1     | Accuracy |
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
| 0.1601        | 1.0   | 679  | 0.1294          | 0.3       | 0.3698 | 0.3312 | 0.9548   |
| 0.1095        | 2.0   | 1358 | 0.1303          | 0.3188    | 0.3532 | 0.3351 | 0.9582   |
| 0.0582        | 3.0   | 2037 | 0.1555          | 0.3285    | 0.4003 | 0.3608 | 0.9566   |


### Framework versions

- Transformers 4.51.2
- Pytorch 2.1.0+cu121
- Datasets 3.5.0
- Tokenizers 0.21.1