ReyaLabColumbia commited on
Commit
496270e
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1 Parent(s): 3f35519

Update Organoid_Analyzer_AI2_HF.py

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  1. Organoid_Analyzer_AI2_HF.py +1 -1
Organoid_Analyzer_AI2_HF.py CHANGED
@@ -271,7 +271,7 @@ def main(args):
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  if len(colonies) <=0:
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  img = pad(np.array(args[0]))
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  caption = np.ones((150, 2048, 3), dtype=np.uint8) * 255 # Multiply by 255 to make it white
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- cv2.putText(caption, 'No colonies detected.', (40, 40), cv2.FONT_HERSHEY_SIMPLEX, 1, (0, 0, 0), 3)
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  cv2.imwrite('results.png', np.vstack((img, caption)))
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  colonies = pd.DataFrame({"organoid_number":[], 'organoid_volume':[], "organoid_area":[],'mean_pixel_value':[], "centroid":[], "necrotic_area":[],"percent_necrotic":[]})
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  with pd.ExcelWriter('results.xlsx') as writer:
 
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  if len(colonies) <=0:
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  img = pad(np.array(args[0]))
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  caption = np.ones((150, 2048, 3), dtype=np.uint8) * 255 # Multiply by 255 to make it white
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+ cv2.putText(caption, 'No organoids detected.', (40, 40), cv2.FONT_HERSHEY_SIMPLEX, 1, (0, 0, 0), 3)
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  cv2.imwrite('results.png', np.vstack((img, caption)))
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  colonies = pd.DataFrame({"organoid_number":[], 'organoid_volume':[], "organoid_area":[],'mean_pixel_value':[], "centroid":[], "necrotic_area":[],"percent_necrotic":[]})
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  with pd.ExcelWriter('results.xlsx') as writer: