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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'Ag_sequence'}) and 5 missing columns ({'label', 'VHH_sequence', 'subject_sex', 'subject_species', 'subject_name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/COGNANO/AVIDa-hIL6/antigen_sequences.csv (at revision f98b1c8759bb8d36dec1ae09d2c3a41b7c3054fa)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
Ag_label: string
Ag_sequence: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 498
to
{'VHH_sequence': Value(dtype='string', id=None), 'label': Value(dtype='int64', id=None), 'Ag_label': Value(dtype='string', id=None), 'subject_species': Value(dtype='string', id=None), 'subject_name': Value(dtype='string', id=None), 'subject_sex': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1417, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1049, in convert_to_parquet
builder.download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 924, in download_and_prepare
self._download_and_prepare(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1000, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'Ag_sequence'}) and 5 missing columns ({'label', 'VHH_sequence', 'subject_sex', 'subject_species', 'subject_name'}).
This happened while the csv dataset builder was generating data using
hf://datasets/COGNANO/AVIDa-hIL6/antigen_sequences.csv (at revision f98b1c8759bb8d36dec1ae09d2c3a41b7c3054fa)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
VHH_sequence
string | label
int64 | Ag_label
string | subject_species
string | subject_name
string | subject_sex
string |
|---|---|---|---|---|---|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYNIGWFRQAPGKERKGVSCISGRGGSTRYADSVKGRFTIFRDNAKNTVYLQMDSLKSEDTAVYYCAADRFPDPCSLATTPLSGREYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRRAPGKGLEWVSHISTSGGFTTYLDSVKGRFTISRDNAKNMLYLQMSSLKPEDTAVYYCAESRGMVGASYAAYVDKGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVLPGGSLKLSCQASGLTFSIYAMSWVRQAPGKGLEWVSDINSDGDNQYYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTGVYYCATDRRATIARMVTRTDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGIASINALGYYRQAPGKQRELVAAVTGGGRTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNAKRWGSDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYDMGWFRQAPGKEREFVAAISWSGGSTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADKGGSYYPEYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLTLACAASGSILDIDIMRWYRQAPGEQREIVATITNSGTTTYRDSVKGRFTISRDTAENTVYLQMNSLKPEDTAVYTCQADVYVNGDDDKFQFFGFWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTPSSYAMGWFRQAPGKEREFVATISWGGSSTNYANSVNGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAERYPRQYYGASGTYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTLDVYAIAWFRQAPGKEREWVSCISESVGATLYAESVKGRFTISRDNAKNTVYLQMNKLKPEDTAVYYCAPPLECSGYGLTKLHDSRSQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCSVSGLTFSDYAMGWFRRQAPGKERELVAAINYSGNGLYYADFVQGRFTITRDNAKNAVYLQMRTLKPEDMAVYYCAARSGRYYNPTVSSYDFWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSIYAMSWVRQAPGKGLEWVSDINSGGDSTYYADSVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYYCATDRRSTIVRMPRRDDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVKPGGSLRLSCQASGLTFSIYAMSWVRQAPGKGLEWVSDINSDGDNQYYADSVKGRFTISRDNALNTVDLQMNSLKAEDTGVYYCATDRRATIRRMPTRADFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCEASGSRFSIAVMGWYRQTPGKQREFVARMTNNGTATYADSVKGRFIISRDNVKMTVDLQMNDLKPEDTGVYGCTATTIRASMPFNYWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSGYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLKLSCVASGSILSINPMGWYRQAPGKQRELVAVITGGGVTNYAHSVKDRFTISRDSAKNTVYLQMNSLKPEDTAVYYCNARRWGVDYWGKGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGRMGNINVLGWYRQAPEKQRELVATITNFGTIKYGDSVKGRFIISKNSAWNMVYLQMNSLKPEDTAVYYCNAANRIGPEKKMDDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGDSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVACISRNAGAKYYADSVKGRFTISRDNAKNTVYLQMNGLKPEDTAVYYCAADNGGSFLYELHLTSREYNYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCTASGSMFSINAMGWYREAPGKQRELVATITSGGSTNYADSVKGRFTIARGNAKNTVYLQMNSLKPEDTAVYFCAAGWQEEYGYDWWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQVGGSLRLSCAASGLTFSNYAMGWYRQAPGKEREWVAGANSNGTTYYAGSVRGRFTISEDIAKNTVSLQMNSLKPEDTAVYYCALKRGMIIRTDPFAHEYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTSAYYAIGWSRQAPGKEREGVSCISIDGSTHYIESVKGRFTIFRDNAKNTVYLQMNSLKPEDTAVYYCGTNPEPLCGSTWYGSTLNWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCVTSGFTSDYYAIGWFRQAPGKAREGVSCISSSGGGVDYEDSVKGRFTISRDNAENTVHLQMNSLKPEDTAVYYCAAYRSKYGCSRDLRLYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLTQAGGSLSLSCVASGGTFSSYTMAWLRQVPGKEGEFVAAISANGERTYYTDSVKGRFTISRDNAKNTLYLQMNSLKLEDTALYYCAPGGLRPGGHFDYDYRGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTLGIYAMGWFRQVAGNERESVANVSWIGGVTYYADSVKGRFTISRDSARNLAYLQMNSLRPEDTAVYFCAADTLGAGLPYEFATWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGTLRLSCAASGFTLGDYAIGWFRQAPGKAREGVSCITRRDGSAYSADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADSYTDFDERCNYFDAEFWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGSISSIAAMGWYRQAPGKQRELVAHVTNSGSTMYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNARILTTDWDPQYNYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAGSGVTFSIYTMGWFRQAPGKEREFVGAVNWSGDSTYADSVKDRFSISRNSFKNAMYLQMNSLKPEDTAVYYCAAKLLARTEYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSRDNAKNTVNLQMNSLKPEDTAVYYCAKPLSDYSAMEGMDYWGKGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGSIFSIAAMGWYRQATGKQRELVAHVTNSGSSYYADPVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNARILTTGWDPQYNYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGFAFGDYAIGWFRQAPGKEREAVSCISNTDGITHYVDSVKGRFTISSDNAKNTVYLQMSSLKPEDTAVYYCAASSQGSGYHYCSGSAYIRVGMDWWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASRVFFRVNDMGWYRQAPGKQRELVATITRRGSTTYADSVKGRFTISRDNAKNTVNLQMNALQPEDTAVYYCATAPSLSSSAVDPIWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYTMGWFRRAPGKERECVSSISGSGSTKYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAALPTYSSYYTEADSAKYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSRYWMYWVRQAPGKGLEWVSTINPSGGSTWYADSVKGRFTISRDNAKNTQYLQMNSLKSEDTAVYYCTSSGDFAYSDFTSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLAQAGGSRRLACTASGHVQVINTMGWHRQAPGKQREFVAIIDRGGVRTYADSVKGRFTISRDSAQNTVYLQMNRLEVEDTAVYYCAAESRPMADPTVGGGISKKEFWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTITNYPMGWFRRPPGKEREFVAAISRNDTITYYADSVKGRFTISRGNAKNTMYLQMNSLNSEDTAVYTCAARTTYSLLNYAYTRPGAYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKERELVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGLDLEYHAIAWFRQSPGKEREGVSCIGTSDGSTYYRDSVKGRFTVSRDNAKNTVYLQMNSLKPEDTGVYYCAADRLITTPQHLCARILEPTYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCRASGLTFSIYAMSWVRQAPGKGLEWVSDINSGGDSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCATDRRSTISTRPSRDDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLTQPGGSLRLSCAASGNSRSINAMGWSRQAPGKQRDLVALITSGGTTAYGESVKGRFTISRDNADNTVWLQMNSLKPEDTAVYYCYAVSDGNSRQYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRSFSFSMYAVAWVRQAPGKDREFVGDINWSGSITTYAESGKGRFTISRDNAKNTVYLQMNSLKPDDTAVYYCAARSRGNSDYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGIVAINTMGWYRQAPGKQRELVARVTGGGIIKYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANRWGSDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAGSGITFNRYNMGWFRQAPGKEREFVAGIIWSGGITDYGDFAKGRFTISMDHAKKEVSLQMLSLKPEDTAVYYCAADLGNPYSGYDRSRLAAYDAWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFSLDGYAIGWFRQAPGKEREAVSCISGRGDYTRYADSVKGRVTISRDNAKNTVYVQMNSLKPEDTADYYCAAELYGSSCSPYATWYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSSYWMYWVRQAPGKGLEWVSDINIDGISTDYADSVKGRFTISRDNANDTMYLQMNGLKSEDTAVYYCAKMFGDSYYPSALDAWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGLTFTRYHMAWFRQAPGKEREMVAAISWSGSTTDYQDSVKGRFTISRDNAKNTVSLQMNNLKPDDTAVYYCAASQTRALAPLIGRYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCTASGLTFSIYAMSWVRQAPGKGLEWVSDINSDGDNAYYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTGVYYCATDRRSTIARMVRRTDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFFFSSYVMSWHRQAPGKERELVASITSDGSTTSYANSVKGRFTISRDNAKNTVSLQMSSLKPEDTAVYYCKAAGGGLGRLSYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCVASGFTLDNYYIGWVRQAPGKERERVSCISGDGVTKTYADSVKGRFIISRDDAGNTAYLQMNSMRPEDTAVYYCAAAPRAYYYCSDSAWEYEYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGVVKAGGSLRLSCVASGNTFSRGGMGWFRQAPGKEREFVAAISWSSGSAYYAESVRGRCAISRDKAKNTVYLQMDNLKPADTAVYYCAANSKDYYLVDDMDYWDKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVPPGGSLRLSCVASGFTFSRYFMSWVRQVPGKELEWVGDINGDGDRSNYPESVKGRFTISRDNAKNTLYLQMDSLKPEDTARYYCARPRTMSGVQGFERYAEWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCTASGVGFGINAMGWYRQAPGNQRELVAGITSDSEYTNYKDSVKGRFTISRDNAKNTVYLQMNRLRPEDTAVYYCNVVDQSGTWNKSWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGIIFSINDMGWYRQVPGKQRELVAGISISLGTNYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTAVYYCNAKSLLRGPYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLMQAGGSLRLSCTASGRTFSTYRMGWFRQAPGKEREFVAAISHFGSSAYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTASYYCAADGDPYHYNYERVGEYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSDINSGGDSTYYADSVKGRFTISRDNAKNTVYLQMDRLKPEDTAVYYCATDRRSTIVTMPRRTDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSGYAMGWFRQAPGKEREFVAAINRSGSITRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAASTKYPTTRRDEYDSWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTLSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAAPGFVLTPYAIGWFRQAPGKEREGVACSSNYDRSSLYADSVKGRFTIFRDVAKNTVFLQMNSLEPEDTGLYYCGAADWNTCVLRTEYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLTLSCVVSGGDLSAYTMGWYRQVPGDYELVASITRSGTTHYSNSVKGRFTISRDNAKRAVYLQMNSLKSEDTAVYACKADGYMTDDDYASGPVYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGSVQPGGSLRLICAASTSILSDKTMAWYRQAPEKERDLVAVMSVDGSAFYTDSVKGRFTISRDYVKNTMYLQMNSLKPEDSAMYYCAAPRSIAGSNEYWGRGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLTCAATGYTLDYYTIGWFRQAPGKEREGVSCISRDGGSRNYVDFVKGRFTITRDNAKNTVYLRMNSLKPEDTAVYYCAARNSTFCGASYYYSWVYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCVASGLTFSSSAMGWFRQAPGKEREFVAAISWSGGGTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCVADTAAILASKTWSRWKYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGSIFSINAMGWYRQAPGKQRELVAVITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNADFPDSTGWGRVDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGFTFDDYAIGWFRQAPGKEREGVSCISSSDGSTYYADSVKGRFTISSDNAKNTVYLQMNSLKPEDTAVYYCAADRALRGSSWLRYYYGMDYWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYNIGWFRQAPGKERKGVSCISGRGGSTRYADSVKGRFTIFRDNAKNTVYLQMDSLKSEDTAVYYCAADRFPDPCSLATTPLSGREYDYWGQGTQVTSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVKPGGSLRLSCQASGLTFSIYAMSWVRQAPGKGLEWVSDINSDGDNQYYADSVKGRFTISRDNAKNTVDLQMNSLKPEDTGVYYCATDRRATIARMVTRADFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCATSGFTLDYYAIGWFRQAPGKEREGVSCISSSGGSTNYADSVKGRFTISRDNAKRTVYLQMNSLKPEDTAVYYCAAGRYYSGSYCDIDYGMDYWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCSASEFTFASYYIGWVRQAPGKEREGVACIRGSDGNTVYTADPKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCEAQRRECPGPLRYDYCGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPVGGWAHMDYWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSGINSGGGSTSYADSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCAEWWPSNYSPYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGTLKLVESGGGLVQPGGSLRLSCAASDVNLELYAIGWFRQAPGQEREAISCISPTGDSTQYSDSVKERFTMSRDNAKNTVYLQLNSLKPEDTAVYHCAPADPLCKVIRTLNSWDQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLAQAGGSLRVSCLSSEPTFMDYGMGWFRQAPGKEREFVAGISGSGSDTKYGDFVKGRFTISRDNAKNTVDLQMDSLKPEDTATYYCARGRYRYSYSDLSMSTYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTISSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSIYPMGWFRQAPGKEREFVSAIAWSGGYTYYADSVKDRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVGSGGTYYRQRDYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGATITDYAMGWFRQAPGKEREFVAAINWSGTIRSYADSARGRFTISRDNAKKTEYLQMNSLKPEDTAVYYCAASTIGLTRAPYQYTYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGSTLNYYSIGWFRQAPGKEREAVSCISGSAGVANYADSVQGRFTISRDNAKNTVHLEMKSLKPEDTAVYYCAAKWSWGSTEQVLCSMTSQYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYDMGWFRQAPGKEREFVAAISWSGGSTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADEGGSYYPEYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGSIASVTAMAWYRQAPGKQRELVAHLIRLGTTTYADSAKGRFTISRDNAKNMVYLQMNSLKPEDTAIYYCKLWGDRGRDLGWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRAFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGFTLDDYHIGWFRQAPGKEREGVSCITTSDSSTYYTDSVKGRFTVSSDNARNTVYLQMNSLKPEDTAVYYCVAILALLDRDYECRDADVRGHWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMDSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISGSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAATVQGITTVQAMCATSQYMKYWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLKLSCVASVSIIGFDDMHWYRQAPGKERDLVATLHIGGSTWVEDSVKGRFTISTDNAKNTLYLQMNSLKPEDTAMYYCAARLEDATMDIEEDYWGRGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGDSLRLSCAASGGIFSRYAMGWFRQAPGKEREIVAAISWSGGSTRYGDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAATISPTYYTGTYAYTSTYDDWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGDSLRLSCAASGRTFSSYNMGWFRQAPGKEREFVAVITWSGGSTYYADSVKGRFTISRDNARSTVYLQMNSLKPEDTAVYYCARQLGGSYYIPRGYDSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLKLSCAASGSSESNYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRGNAKNTVYLQMNSLKPEDTAVYYCAAKPIAYYNDEYEYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTLSNYAMAWFRQAPGKEREFVAGIRWTGASTYYAWYTDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYFCAADRSGRVSSRLEYEYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGVTFSMYYMGWVRQAPGKGLEWVSYINSGGGSTSADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYFCAKPSGWDWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAVGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLKPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADEVGGWGSRYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCAASGVTLDYYAIGWFRQAPGKEREGVSCISSSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADWAGICTVVAGRGVYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSTYTMGWFRQAPGKEREFVAAISRSGSITLYADSVKGPFTISRDNAKSTMYLQMNSLKAEDTAVYYCAATFKPNGLPKTRWEYDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQVSGKEREFVAAISRSGSITYYPDSVKGRFTIDRDNAKFTVYLQMNSLKPEDTAVYYCAAALSYYSDSYYTAQWQYNYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCVASGFTSDPYAIGWFRQAPGKEREGVSCISSSGGSIEYEDSVKGRFTISRDNAENTVHLQMNSLKPEDTAVYYCAAYRSKYGCARELDLYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGSTTNINSMGWYRQAPGKQREVVARITSDGGSTNYADSVKGRFTISRDNAKNTLSLQMNSLKPDDTAVYYCNANQVTHGWVRGFWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCAASGRTFSSYAMGWFRQAPGKEREFVAAISWSGGSTYYADSVKGRFTISRDNANNTVYLQMNSLRPEDTAVYACAADLLYHPGSWNDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGESLRLSCAASVRLFSINVMGYWRQPPGKERELVALIRTGGSTLYADSAKGRFTISSDDAKNTLYLQMNSLKPEDTAVYYCASQGGGDADYVNGPIVFGTPHVSDMDSWGKGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQSGGSLRLSCAASGISVSMTPMGWYRQDPGEHRELVAAITKGGDSAWYADSVKGRFTISRDDAKNTVYLQMNNLKPEDTAMYYCSRDPPLPSYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCALSGFTLDYSTIGWFRQVPGKEREGVSCISSSGRTTNYADSVKGRFTISRDNAKNTVYLEMNSLKPEDTAVYYCAADMGNVDVTIRPMCVAAKEYANWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCVVSGQLSGFTLADYAVGWFRQAPGTEREGLTCISDDGNAYYADSVKGRFTISRDDAKNTFYLQMDSLKPEDTAVYYCAADALVCPYDLSDFGSWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVRPGGSLTLSCAASGYTLDFYAVAWFRQAPGKEREGVSCIRVGDGPTWYADSVKGRFTISRDKVNHTVYLQMNSLKPEDTAVYYCATDRWSSCPLRGDYWGQGTQVTVSSHHHHHH
| 0
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQPGGSLRLSCVASGFTSDYYAIGWFRQAPGKEREGVSCISSSGGSKDYEDSVKGRFTISRDNAENTVHLQMNSLKPEDTAVYYCAAYRSKYYCSRDLNLYDYWGQGTQVTVSSHHHHHH
| 1
|
IL-6_WTs
|
alpaca
|
wizzy
|
male
|
End of preview.
AVIDa-hIL6
AVIDa-hIL6 is an antigen-variable domain of heavy chain of heavy chain antibody (VHH) interaction dataset produced from an alpaca immunized with the human interleukin-6 (IL-6) protein. AVIDa-hIL6 includes binary labels indicating the binding or non-binding of diverse VHH sequences to wild type and 30 mutants of the IL-6 protein. Further details on AVIDa-hIL6 are described in our paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions .”
Columns
AVIDa-hIL6.csv
| Column | Description |
|---|---|
| VHH_sequence | Amino acid sequence of VHH |
| Ag_label | Antigen Type |
| label | Binary label represented by 1 for the binding pair and 0 for the non-binding pair |
| subject_species | Species of the subject from which VHH was collected |
| subject_name | Name of the subject from which VHH was collected |
| subject_sex | Sex of the subject from which VHH was collected |
antigen_sequences.csv
| Column | Description |
|---|---|
| Ag_label | Antigen Type |
| Ag_sequence | Amino acid sequence of antigen |
Links
- Project Page: https://www.cognano.co.jp/datasets/avida-hil6
- Code: https://github.com/cognano/AVIDa-hIL6
- Paper: https://arxiv.org/abs/2306.03329
Citation
If you use AVIDa-hIL6 in your research, please cite the following paper.
@inproceedings{tsuruta2023avida,
title={{AVID}a-h{IL}6: A Large-Scale {VHH} Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions},
author={Hirofumi Tsuruta and Hiroyuki Yamazaki and Ryota Maeda and Ryotaro Tamura and Jennifer N. Wei and Zelda Mariet and Poomarin Phloyphisut and Hidetoshi Shimokawa and Joseph R. Ledsam and Lucy Colwell and Akihiro Imura},
booktitle={Advances in Neural Information Processing Systems 36},
year={2023},
}
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