id
int64 272k
38.6M
| published
stringdate 1977-03-03 00:00:00
2024-12-03 00:00:00
| title
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stringlengths 38
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| citations
int64 12.2k
89.2k
|
|---|---|---|---|---|
11,846,609
|
2001-12-03 00:00:00
|
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.
|
https://pubmed.ncbi.nlm.nih.gov/11846609
| 89,231
|
33,538,338
|
2021-05-03 00:00:00
|
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries.
|
https://pubmed.ncbi.nlm.nih.gov/33538338
| 63,310
|
25,516,281
|
2014-12-03 00:00:00
|
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
|
https://pubmed.ncbi.nlm.nih.gov/25516281
| 59,613
|
30,207,593
|
2018-11-03 00:00:00
|
Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
|
https://pubmed.ncbi.nlm.nih.gov/30207593
| 43,137
|
2,231,712
|
1990-10-05 00:00:00
|
Basic local alignment search tool.
|
https://pubmed.ncbi.nlm.nih.gov/2231712
| 41,839
|
19,505,943
|
2009-08-15 00:00:00
|
The Sequence Alignment/Map format and SAMtools.
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https://pubmed.ncbi.nlm.nih.gov/19505943
| 39,608
|
22,743,772
|
2012-06-28 00:00:00
|
Fiji: an open-source platform for biological-image analysis.
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https://pubmed.ncbi.nlm.nih.gov/22743772
| 38,053
|
24,695,404
|
2014-08-01 00:00:00
|
Trimmomatic: a flexible trimmer for Illumina sequence data.
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https://pubmed.ncbi.nlm.nih.gov/24695404
| 37,436
|
16,199,517
|
2005-10-25 00:00:00
|
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
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https://pubmed.ncbi.nlm.nih.gov/16199517
| 37,326
|
21,376,230
|
2011-03-04 00:00:00
|
Hallmarks of cancer: the next generation.
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https://pubmed.ncbi.nlm.nih.gov/21376230
| 36,248
|
23,104,886
|
2013-01-01 00:00:00
|
STAR: ultrafast universal RNA-seq aligner.
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https://pubmed.ncbi.nlm.nih.gov/23104886
| 35,851
|
22,388,286
|
2012-03-04 00:00:00
|
Fast gapped-read alignment with Bowtie 2.
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https://pubmed.ncbi.nlm.nih.gov/22388286
| 35,156
|
19,451,168
|
2009-07-15 00:00:00
|
Fast and accurate short read alignment with Burrows-Wheeler transform.
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https://pubmed.ncbi.nlm.nih.gov/19451168
| 32,244
|
18,156,677
|
2008-01-03 00:00:00
|
A short history of SHELX.
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https://pubmed.ncbi.nlm.nih.gov/18156677
| 30,540
|
9,254,694
|
1997-09-01 00:00:00
|
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
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https://pubmed.ncbi.nlm.nih.gov/9254694
| 30,101
|
14,597,658
|
2003-11-03 00:00:00
|
Cytoscape: a software environment for integrated models of biomolecular interaction networks.
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https://pubmed.ncbi.nlm.nih.gov/14597658
| 29,069
|
9,310,563
|
1997-09-13 00:00:00
|
Bias in meta-analysis detected by a simple, graphical test.
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https://pubmed.ncbi.nlm.nih.gov/9310563
| 28,851
|
18,929,686
|
2009-04-03 00:00:00
|
Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.
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https://pubmed.ncbi.nlm.nih.gov/18929686
| 28,450
|
22,930,834
|
2012-07-03 00:00:00
|
NIH Image to ImageJ: 25 years of image analysis.
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https://pubmed.ncbi.nlm.nih.gov/22930834
| 28,203
|
19,910,308
|
2010-01-01 00:00:00
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
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https://pubmed.ncbi.nlm.nih.gov/19910308
| 27,564
|
15,264,254
|
2004-10-03 00:00:00
|
UCSF Chimera--a visualization system for exploratory research and analysis.
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https://pubmed.ncbi.nlm.nih.gov/15264254
| 26,477
|
25,605,792
|
2015-04-20 00:00:00
|
limma powers differential expression analyses for RNA-sequencing and microarray studies.
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https://pubmed.ncbi.nlm.nih.gov/25605792
| 26,023
|
30,178,033
|
2018-10-02 00:00:00
|
PRISMA Extension for Scoping Reviews (PRISMA-ScR): Checklist and Explanation.
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https://pubmed.ncbi.nlm.nih.gov/30178033
| 25,083
|
17,701,901
|
2007-09-03 00:00:00
|
PLINK: a tool set for whole-genome association and population-based linkage analyses.
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https://pubmed.ncbi.nlm.nih.gov/17701901
| 24,187
|
31,986,264
|
2020-02-15 00:00:00
|
Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
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https://pubmed.ncbi.nlm.nih.gov/31986264
| 23,913
|
271,968
|
1977-12-03 00:00:00
|
DNA sequencing with chain-terminating inhibitors.
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https://pubmed.ncbi.nlm.nih.gov/271968
| 23,556
|
19,131,956
|
2009-12-03 00:00:00
|
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
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https://pubmed.ncbi.nlm.nih.gov/19131956
| 23,417
|
34,265,844
|
2021-08-03 00:00:00
|
Highly accurate protein structure prediction with AlphaFold.
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https://pubmed.ncbi.nlm.nih.gov/34265844
| 23,275
|
23,329,690
|
2013-04-03 00:00:00
|
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
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https://pubmed.ncbi.nlm.nih.gov/23329690
| 22,980
|
10,592,173
|
2000-01-01 00:00:00
|
KEGG: kyoto encyclopedia of genes and genomes.
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https://pubmed.ncbi.nlm.nih.gov/10592173
| 22,823
|
15,572,765
|
2004-12-03 00:00:00
|
Coot: model-building tools for molecular graphics.
|
https://pubmed.ncbi.nlm.nih.gov/15572765
| 22,722
|
3,558,716
|
1987-12-03 00:00:00
|
A new method of classifying prognostic comorbidity in longitudinal studies: development and validation.
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https://pubmed.ncbi.nlm.nih.gov/3558716
| 22,568
|
11,556,941
|
2001-09-03 00:00:00
|
The PHQ-9: validity of a brief depression severity measure.
|
https://pubmed.ncbi.nlm.nih.gov/11556941
| 22,451
|
15,034,147
|
2004-12-03 00:00:00
|
MUSCLE: multiple sequence alignment with high accuracy and high throughput.
|
https://pubmed.ncbi.nlm.nih.gov/15034147
| 22,410
|
22,455,463
|
2012-05-03 00:00:00
|
clusterProfiler: an R package for comparing biological themes among gene clusters.
|
https://pubmed.ncbi.nlm.nih.gov/22455463
| 22,130
|
843,571
|
1977-03-03 00:00:00
|
The measurement of observer agreement for categorical data.
|
https://pubmed.ncbi.nlm.nih.gov/843571
| 21,940
|
17,695,343
|
2007-05-03 00:00:00
|
G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences.
|
https://pubmed.ncbi.nlm.nih.gov/17695343
| 21,447
|
20,383,002
|
2010-04-03 00:00:00
|
Features and development of Coot.
|
https://pubmed.ncbi.nlm.nih.gov/20383002
| 21,032
|
3,802,833
|
1986-09-03 00:00:00
|
Meta-analysis in clinical trials.
|
https://pubmed.ncbi.nlm.nih.gov/3802833
| 20,670
|
7,984,417
|
1994-11-11 00:00:00
|
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
|
https://pubmed.ncbi.nlm.nih.gov/7984417
| 20,559
|
8,744,570
|
1996-02-03 00:00:00
|
VMD: visual molecular dynamics.
|
https://pubmed.ncbi.nlm.nih.gov/8744570
| 20,064
|
17,872,937
|
2007-12-03 00:00:00
|
Consolidated criteria for reporting qualitative research (COREQ): a 32-item checklist for interviews and focus groups.
|
https://pubmed.ncbi.nlm.nih.gov/17872937
| 19,325
|
20,110,278
|
2010-03-15 00:00:00
|
BEDTools: a flexible suite of utilities for comparing genomic features.
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https://pubmed.ncbi.nlm.nih.gov/20110278
| 19,010
|
12,111,919
|
2002-06-15 00:00:00
|
Quantifying heterogeneity in a meta-analysis.
|
https://pubmed.ncbi.nlm.nih.gov/12111919
| 18,903
|
14,744,438
|
2004-01-23 00:00:00
|
MicroRNAs: genomics, biogenesis, mechanism, and function.
|
https://pubmed.ncbi.nlm.nih.gov/14744438
| 18,800
|
27,004,904
|
2016-07-03 00:00:00
|
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
|
https://pubmed.ncbi.nlm.nih.gov/27004904
| 18,220
|
25,741,868
|
2015-05-03 00:00:00
|
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.
|
https://pubmed.ncbi.nlm.nih.gov/25741868
| 18,095
|
20,644,199
|
2010-09-03 00:00:00
|
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.
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https://pubmed.ncbi.nlm.nih.gov/20644199
| 17,611
|
24,227,677
|
2014-04-01 00:00:00
|
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
|
https://pubmed.ncbi.nlm.nih.gov/24227677
| 17,580
|
20,124,702
|
2010-02-03 00:00:00
|
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
|
https://pubmed.ncbi.nlm.nih.gov/20124702
| 17,363
|
6,880,820
|
1983-06-03 00:00:00
|
The hospital anxiety and depression scale.
|
https://pubmed.ncbi.nlm.nih.gov/6880820
| 17,208
|
3,447,015
|
1987-07-03 00:00:00
|
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
|
https://pubmed.ncbi.nlm.nih.gov/3447015
| 17,135
|
21,296,855
|
2011-12-03 00:00:00
|
Global cancer statistics.
|
https://pubmed.ncbi.nlm.nih.gov/21296855
| 16,612
|
11,328,886
|
2001-05-01 00:00:00
|
A new mathematical model for relative quantification in real-time RT-PCR.
|
https://pubmed.ncbi.nlm.nih.gov/11328886
| 16,311
|
10,592,235
|
2000-01-01 00:00:00
|
The Protein Data Bank.
|
https://pubmed.ncbi.nlm.nih.gov/10592235
| 16,256
|
29,722,887
|
2018-06-01 00:00:00
|
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.
|
https://pubmed.ncbi.nlm.nih.gov/29722887
| 16,248
|
19,097,774
|
2009-01-03 00:00:00
|
New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1).
|
https://pubmed.ncbi.nlm.nih.gov/19097774
| 16,123
|
27,214,047
|
2016-07-03 00:00:00
|
DADA2: High-resolution sample inference from Illumina amplicon data.
|
https://pubmed.ncbi.nlm.nih.gov/27214047
| 15,840
|
16,717,171
|
2006-05-22 00:00:00
|
A brief measure for assessing generalized anxiety disorder: the GAD-7.
|
https://pubmed.ncbi.nlm.nih.gov/16717171
| 15,755
|
22,506,599
|
2012-05-03 00:00:00
|
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
|
https://pubmed.ncbi.nlm.nih.gov/22506599
| 15,699
|
24,451,623
|
2014-05-01 00:00:00
|
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
|
https://pubmed.ncbi.nlm.nih.gov/24451623
| 15,694
|
19,114,008
|
2008-12-29 00:00:00
|
WGCNA: an R package for weighted correlation network analysis.
|
https://pubmed.ncbi.nlm.nih.gov/19114008
| 15,471
|
19,461,840
|
2007-08-01 00:00:00
|
Phaser crystallographic software.
|
https://pubmed.ncbi.nlm.nih.gov/19461840
| 15,460
|
2,748,771
|
1989-05-03 00:00:00
|
The Pittsburgh Sleep Quality Index: a new instrument for psychiatric practice and research.
|
https://pubmed.ncbi.nlm.nih.gov/2748771
| 15,419
|
25,651,787
|
2015-03-03 00:00:00
|
Global cancer statistics, 2012.
|
https://pubmed.ncbi.nlm.nih.gov/25651787
| 15,247
|
24,132,122
|
2013-12-03 00:00:00
|
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
|
https://pubmed.ncbi.nlm.nih.gov/24132122
| 15,174
|
23,193,283
|
2013-01-03 00:00:00
|
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
|
https://pubmed.ncbi.nlm.nih.gov/23193283
| 14,996
|
32,109,013
|
2020-04-30 00:00:00
|
Clinical Characteristics of Coronavirus Disease 2019 in China.
|
https://pubmed.ncbi.nlm.nih.gov/32109013
| 14,917
|
19,261,174
|
2009-12-03 00:00:00
|
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
|
https://pubmed.ncbi.nlm.nih.gov/19261174
| 14,891
|
32,171,076
|
2020-03-28 00:00:00
|
Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study.
|
https://pubmed.ncbi.nlm.nih.gov/32171076
| 14,675
|
25,260,700
|
2015-01-15 00:00:00
|
HTSeq--a Python framework to work with high-throughput sequencing data.
|
https://pubmed.ncbi.nlm.nih.gov/25260700
| 14,628
|
21,546,353
|
2011-10-03 00:00:00
|
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
|
https://pubmed.ncbi.nlm.nih.gov/21546353
| 14,493
|
2,440,339
|
1987-04-03 00:00:00
|
Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
|
https://pubmed.ncbi.nlm.nih.gov/2440339
| 14,455
|
2,868,172
|
1986-02-08 00:00:00
|
Statistical methods for assessing agreement between two methods of clinical measurement.
|
https://pubmed.ncbi.nlm.nih.gov/2868172
| 14,422
|
30,423,086
|
2018-09-01 00:00:00
|
fastp: an ultra-fast all-in-one FASTQ preprocessor.
|
https://pubmed.ncbi.nlm.nih.gov/30423086
| 14,420
|
388,439
|
1979-09-03 00:00:00
|
Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.
|
https://pubmed.ncbi.nlm.nih.gov/388439
| 14,415
|
19,414,839
|
2009-05-05 00:00:00
|
A new equation to estimate glomerular filtration rate.
|
https://pubmed.ncbi.nlm.nih.gov/19414839
| 14,344
|
1,593,914
|
1992-06-03 00:00:00
|
The MOS 36-item short-form health survey (SF-36). I. Conceptual framework and item selection.
|
https://pubmed.ncbi.nlm.nih.gov/1593914
| 14,214
|
25,220,842
|
2015-03-01 00:00:00
|
Cancer incidence and mortality worldwide: sources, methods and major patterns in GLOBOCAN 2012.
|
https://pubmed.ncbi.nlm.nih.gov/25220842
| 14,206
|
31,978,945
|
2020-02-20 00:00:00
|
A Novel Coronavirus from Patients with Pneumonia in China, 2019.
|
https://pubmed.ncbi.nlm.nih.gov/31978945
| 14,171
|
38,572,751
|
2024-12-03 00:00:00
|
Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
|
https://pubmed.ncbi.nlm.nih.gov/38572751
| 14,019
|
15,273,542
|
2004-08-03 00:00:00
|
Classification of surgical complications: a new proposal with evaluation in a cohort of 6336 patients and results of a survey.
|
https://pubmed.ncbi.nlm.nih.gov/15273542
| 13,883
|
18,546,601
|
2008-12-03 00:00:00
|
Analyzing real-time PCR data by the comparative C(T) method.
|
https://pubmed.ncbi.nlm.nih.gov/18546601
| 13,612
|
18,798,982
|
2008-12-03 00:00:00
|
Model-based analysis of ChIP-Seq (MACS).
|
https://pubmed.ncbi.nlm.nih.gov/18798982
| 13,575
|
17,846,036
|
2007-11-01 00:00:00
|
Clustal W and Clustal X version 2.0.
|
https://pubmed.ncbi.nlm.nih.gov/17846036
| 13,494
|
3,899,825
|
1985-07-03 00:00:00
|
Homeostasis model assessment: insulin resistance and beta-cell function from fasting plasma glucose and insulin concentrations in man.
|
https://pubmed.ncbi.nlm.nih.gov/3899825
| 13,254
|
31,078,660
|
2019-07-03 00:00:00
|
The REDCap consortium: Building an international community of software platform partners.
|
https://pubmed.ncbi.nlm.nih.gov/31078660
| 13,236
|
25,751,142
|
2015-04-03 00:00:00
|
HISAT: a fast spliced aligner with low memory requirements.
|
https://pubmed.ncbi.nlm.nih.gov/25751142
| 13,202
|
26,903,338
|
2016-02-23 00:00:00
|
The Third International Consensus Definitions for Sepsis and Septic Shock (Sepsis-3).
|
https://pubmed.ncbi.nlm.nih.gov/26903338
| 13,182
|
25,371,430
|
2015-01-03 00:00:00
|
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
|
https://pubmed.ncbi.nlm.nih.gov/25371430
| 13,153
|
25,554,246
|
2015-01-01 00:00:00
|
Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015 statement.
|
https://pubmed.ncbi.nlm.nih.gov/25554246
| 13,059
|
19,499,576
|
2010-01-30 00:00:00
|
AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.
|
https://pubmed.ncbi.nlm.nih.gov/19499576
| 12,971
|
16,904,174
|
2006-08-25 00:00:00
|
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.
|
https://pubmed.ncbi.nlm.nih.gov/16904174
| 12,963
|
27,919,275
|
2016-12-05 00:00:00
|
Rayyan-a web and mobile app for systematic reviews.
|
https://pubmed.ncbi.nlm.nih.gov/27919275
| 12,824
|
21,816,040
|
2011-08-04 00:00:00
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
|
https://pubmed.ncbi.nlm.nih.gov/21816040
| 12,684
|
6,606,682
|
1983-12-16 00:00:00
|
Rapid colorimetric assay for cellular growth and survival: application to proliferation and cytotoxicity assays.
|
https://pubmed.ncbi.nlm.nih.gov/6606682
| 12,630
|
16,204,405
|
2005-11-03 00:00:00
|
Three approaches to qualitative content analysis.
|
https://pubmed.ncbi.nlm.nih.gov/16204405
| 12,329
|
31,912,902
|
2020-01-03 00:00:00
|
Cancer statistics, 2020.
|
https://pubmed.ncbi.nlm.nih.gov/31912902
| 12,328
|
32,142,651
|
2020-04-16 00:00:00
|
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
|
https://pubmed.ncbi.nlm.nih.gov/32142651
| 12,261
|
15,817,019
|
2005-04-03 00:00:00
|
The Montreal Cognitive Assessment, MoCA: a brief screening tool for mild cognitive impairment.
|
https://pubmed.ncbi.nlm.nih.gov/15817019
| 12,245
|
PubMed Highly Cited
Current as of December 4, 2025
This dataset is metadata (id, publication date, title, link, # citations) for the Top 100 most highly cited PubMed articles. It was created using paperetl and the PubMed Baseline.
Retrieve article abstracts
The full article abstracts can be retrieved via the PubMed API. This method accepts batches of PubMed IDs.
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