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2025-04-17T18:06:06
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
-581.543487
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Mo54
Mo
A
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54
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[ "test_Snapshot_7_of_40_of_AIMD_NVT_simulation_at_300_K" ]
null
data/MD/5428/MD_3029330070173112270945428.json
null
null
null
{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
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2025-04-16T18:18:40
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo54
Mo
A
[ "Mo" ]
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54
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null
data/MD/5428/MD_3029330070173112270945428.json
null
null
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{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
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2025-04-16T16:08:56
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo54
Mo
A
[ "Mo" ]
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54
1
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null
data/MD/5428/MD_3029330070173112270945428.json
null
null
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{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
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2025-04-16T18:30:08
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo54
Mo
A
[ "Mo" ]
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54
1
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null
data/MD/5428/MD_3029330070173112270945428.json
null
null
null
{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
PO_1248459022903475977393762
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2025-04-16T15:09:27
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo53
Mo
A
[ "Mo" ]
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53
1
3
[ 1, 1, 1 ]
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null
data/MD/5428/MD_3029330070173112270945428.json
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null
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{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
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2025-04-16T15:42:26
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo53
Mo
A
[ "Mo" ]
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53
1
3
[ 1, 1, 1 ]
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null
data/MD/5428/MD_3029330070173112270945428.json
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null
null
{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
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2025-04-16T21:13:01
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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Mo34
Mo
A
[ "Mo" ]
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34
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null
data/MD/5428/MD_3029330070173112270945428.json
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null
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{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}
PO_7410810084576680433691277
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2025-04-16T21:57:13
DS_l0b6iq3no012_0
1
VASP
DFT-PBE
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2025-04-16T18:31:03
DS_l0b6iq3no012_0
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2025-04-16T16:26:23
DS_l0b6iq3no012_0
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2025-04-16T16:03:20
DS_l0b6iq3no012_0
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Mo54
Mo
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2025-04-16T22:04:30
DS_l0b6iq3no012_0
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2025-04-16T18:33:21
DS_l0b6iq3no012_0
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VASP
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2025-04-16T21:37:17
DS_l0b6iq3no012_0
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Mo54
Mo
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2025-04-16T18:44:30
DS_l0b6iq3no012_0
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Mo54
Mo
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2025-04-16T20:34:49
DS_l0b6iq3no012_0
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2025-04-16T20:22:20
DS_l0b6iq3no012_0
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2025-04-16T18:47:30
DS_l0b6iq3no012_0
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2025-04-16T20:11:48
DS_l0b6iq3no012_0
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2025-04-16T16:44:56
DS_l0b6iq3no012_0
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2025-04-16T21:37:22
DS_l0b6iq3no012_0
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2025-04-16T17:38:30
DS_l0b6iq3no012_0
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Mo54
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2025-04-16T20:26:41
DS_l0b6iq3no012_0
1
VASP
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11348375224203906692479169679622096833877242537747080353367128348468467639138849595709105979935810113024410840291772655258530505440192553794017243519238795
[ [ 9.450121, 0, 0 ], [ 0, 9.450121, 0 ], [ 0, 0, 9.450121 ] ]
[ [ 1.5716968741149997, 3.8427972034399995, 4.336462074359 ], [ 6.98949849402, 3.469961579627, 7.534449171606 ], [ 5.729466610484999, 5.669968648668999, 2.602988578845 ], [ 5.1259251826989995, 0.04155218203699999, 2.581763607079 ], [ 9.422725099221, ...
[ true, true, true ]
Mo54
Mo
A
[ "Mo" ]
[ 1 ]
[ 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, 42, ...
54
1
3
[ 1, 1, 1 ]
[ "test_Snapshot_37_of_40_of_AIMD_NVT_simulation_at_6000_K" ]
null
data/MD/5428/MD_3029330070173112270945428.json
null
null
null
{"input": {"energy-convergence": {"value": 1e-05, "units": "eV"}, "forces-convergence": {"value": 0.02, "units": "eV/Ang"}, "k-point-mesh": "4x4x4", "kinetic-energy-cutoff": {"value": 520, "units": "eV"}}, "hash": "3029330070173112270945428248346756104262166913948615023730061846371048907385446860933213732224086768570944475097288834560418435999319412793966686182956189", "id": "MD_3029330070173112270945428"}

Cite this dataset Zuo, Y., Chen, C., Li, X., Deng, Z., Chen, Y., Behler, J., Csányi, G., Shapeev, A. V., Thompson, A. P., Wood, M. A., and Ong, S. P. mlearn Mo test. ColabFit, 2023. https://doi.org/10.60732/3db3283a

This dataset has been curated and formatted for the ColabFit Exchange

This dataset is also available on the ColabFit Exchange:

https://materials.colabfit.org/id/DS_l0b6iq3no012_0

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Dataset Name

mlearn Mo test

Description

A comprehensive DFT data set was generated for six elements - Li, Mo, Ni, Cu, Si, and Ge. These elements were chosen to span a variety of chemistries (main group metal, transition metal, and semiconductor), crystal structures (bcc, fcc, and diamond) and bonding types (metallic and covalent). This dataset comprises only the Mo configurations

Dataset authors

Yunxing Zuo, Chi Chen, Xiangguo Li, Zhi Deng, Yiming Chen, Jörg Behler, Gábor Csányi, Alexander V. Shapeev, Aidan P. Thompson, Mitchell A. Wood, Shyue Ping Ong

Publication

https://doi.org/10.1021/acs.jpca.9b08723

Original data link

https://github.com/materialsvirtuallab/mlearn

License

BSD-3-Clause

Number of unique molecular configurations

23

Number of atoms

1189

Elements included

Mo

Properties included

energy, atomic forces, cauchy stress


Usage

  • ds.parquet : Aggregated dataset information.
  • co/ directory: Configuration rows each include a structure, calculated properties, and metadata.
  • cs/ directory : Configuration sets are subsets of configurations grouped by some common characteristic. If cs/ does not exist, no configurations sets have been defined for this dataset.
  • cs_co_map/ directory : The mapping of configurations to configuration sets (if defined).

ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:

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